PUBLICATIONS

Refereed Publications

[1]
P. Erästö, F. Hoti, and K. Auranen. Modeling transmission of multitype infectious agents - application to carriage of Streptococcus pneumoniae. Statistics in Medicine, FEB 2012. DOI: 10.1002/sim.4487.

[2]
E. Urgard, T. Vooder, U. Võsa, K. Välk, M. Liu, C. Luo, F. Hoti, R. Roosipuu, T. Annilo, J. Laine, C.M. Frenz, L. Zhang, and A. Metspalu. Metagenes associated with survival in non-small cell lung cancer. Cancer Informatics, 10:1-9, 2011.

[3]
A.M. Bauer, F. Hoti, T.C. Reetz, W-D. Schuh, J. Léon, and M.J. Sillanpää. Bayesian prediction of breeding values by accounting for genotype-by-environment interaction in self-pollinating crops. Genetics Research, 91:193-207, 2009.

[4]
A.M. Bauer, F. Hoti, M. von Korff, K. Pillen, J. Léon, and M.J. Sillanpää. Advanced backcross-QTL analysis in spring barley (H. vulgare ssp. spontaneum) comparing a REML vs. a bayesian model in multi-environmental field trials. Theoretical and Applied Genetics, 119:105-123, 2009.

[5]
P. Erästö, F. Hoti, S. Granat, Z. Mia, P. Mäkelä, and K. Auranen. Modelling multi-type transmission of Pneumococcal carriage in Bangladeshi families. Epidemiology and Infection, 17:1-12, 2009.

[6]
F. Hoti, P. Erästö, T. Leino, and K. Auranen. Outbreaks of Streptococcus pneumoniae carriage in day care cohorts in Finland- implications for elimination of transmission. BMC Infectious Diseases, 9:102, 2009.

[7]
T. Leino, F. Hoti, R. Syrjänen, A. Tanskanen, and K. Auranen. Clustering of serotypes in a longitudinal study of Streptococcus pneumoniae carriage in three day care centres. BMC Infectious Diseases, 8:173, 2008.

[8]
P. Waldmann, J. Hallander, F. Hoti, and M. J. Sillanpää. Efficient MCMC implementation of Bayesian analysis of additive and dominance genetic variances in non-inbred pedigrees. Genetics, 179:1101-1112, June 2008.

[9]
M. J. Sillanpää and F. Hoti. Mapping quantitative trait loci from a single tail sample of the phenotype distribution including survival data. Genetics, 177:2361-2377, December 2007.

[10]
F. Hoti and M. J. Sillanpää. Bayesian mapping of genotype × expression interactions in quantitative and qualitative traits. Heredity, 97:4-18, 2006.

[11]
L. Holmström and F. Hoti. Application of semiparametric density estimation to classification. In ICPR2004, Proceedings of the 2004 International Conference on Pattern Recognition, August 23-26, 2004.

[12]
F. Hoti. Studies in computational statistical methods with applications to pattern recognition and data analysis. Research Reports A41, Rolf Nevanlinna Institute, march 2004. Doctoral thesis in applied mathematics, University of Helsinki.

[13]
F. Hoti and L. Holmström. A semiparametric density estimation approach to pattern classification. Pattern Recognition, 37:409-419, 2004.

[14]
F. Hoti, A. Tuulio-Hendriksson, J. Haukka, T. Partonen, L. Holmström, and J. Lönnqvist. Family-based clusters of cognitive test performance in familial schizophrenia. BMC Psychiatry, 4:20, 2004.

[15]
F. Hoti and L. Holmström. On the estimation error in binned local linear regression. Journal of Nonparametric Statistics, 15(4-5):625-642, 2003.

[16]
F.J. Hoti, M.J. Sillanpää, and L. Holmström. A note on estimating the posterior density of a quantitative trait locus from a Markov chain Monte Carlo sample. Genetic Epidemiology, 22:369-376, 2002.

[17]
F. Hoti. Kernel regression via binned data. Research Reports C38, Rolf Nevanlinna Institute, February 2001. Licentiate thesis in applied mathematics, University of Helsinki.

[18]
F. Hoti and L. Holmström. Reduced kernel regression for fast classification. In P. Brenner L. Arkeryd, J. Rergh and R. Pettersson, editors, Progress in Industrial Mathematics at ECMI 98, pages 405-412. B.G. Teubner Stuttgart - Leipzig, 1999.

[19]
L. Holmström and F. Hoti. Radial basis function classification as computationally efficient kernel regression. In IJCNN '98, Proceedings of the 1998 IEEE International Joint Conference on Neural Networks, Anchorage, Alaska, May 4-9, volume 2, pages 1305-1310, 1998.

[20]
F. Hoti. Using kernel regression to estimate class posterior probabilities (in Finnish). Research Reports A19, Rolf Nevanlinna Institute, May 1997. Master's thesis in applied mathematics, University of Helsinki.

Other Publications (Proceedings, Talks, Posters)

[1]
D. Pessoa, F. Hoti, R. Syrjänen, R. Sá Leão, G. Gomes, and K. Auranen. Comparative analysis of Streptococcus pneumoniae transmission in portuguese and finnish day-care netres. In ISPPD-8 8th International Symposium on Pneumococci and Pneumococcal Diseases, Abstracts, March 11-15 2012.

[2]
P. Erästö, F. Hoti, and K. Auranen. The effect of sampling interval on the estimation of transmission dynamics of Streptococcus pneumoniae. In XXVth International Biometric Conference , December 5-10 2010.

[3]
A.M. Bauer, F. Hoti, M. von Korff, K. Pillen, J. Léon, and M.J. Sillanpää. Bayesian multi-environmental advanced backcross-QTL analysis in Spring Barley. In 10th International Barley Genetics Symposium, April 5-10 2008.

[4]
P. Erästö, S. Granat, P.H. Mäkelä, F. Hoti, Z. Mia, and K. Auranen. Modelling multi-type transmission of Pneumococcal carriage in bangladeshi families. In ISPPD-6 6th International Symposium on Pneumococci and Pneumococcal Diseases, Abstracts, June 8-12 2008.

[5]
F. Hoti, P. Erästö, R. Syrjänen, T. Leino, and K. Auranen. The micro-epidemic dynamics of Pneumococcal transmission in day care groups and families. In XXIVth International Biometric Conference , July 13-18 2008.

[6]
F. Hoti, T. Leino, R. Syrjänen, A. Tanskanen, and K. Auranen. Clustering of serotypes in a longitudinal study of Streptococcus pneumoniae carriage in three day care centres. In ISPPD-6 6th International Symposium on Pneumococci and Pneumococcal Diseases, Abstracts, June 8-12 2008.

[7]
P. Erästö and F. Hoti. Transmission analysis of carriage of Streptococcus pneumoniae. In NBBC07 First Nordic-Baltic Biometric Conference, June 6-8 2007.

[8]
F. Hoti and K. Auranen. Micro-epidemics in the carriage of Streptococcus pneumoniae. In HCW07 Helsinki Carriage Workshop, June 27-29 2007.

[9]
F. Hoti and K. Auranen. Micro-epidemics in the carriage of Streptococcus pneumoniae. In NBBC07 First Nordic-Baltic Biometric Conference, June 6-8 2007.

[10]
P. Waldmann, J. Hallander, F. Hoti, and M. Sillanpää. The effect of dominance genetic parameters on rank of breeding value predictions. In NBBC07 First Nordic-Baltic Biometric Conference, June 6-8 2007.

[11]
F. Hoti, H. Salo, P. Erästö, M. Nurhonen, and K. Auranen. Modelling competition between serotypes of Streptococcus pneumoniae. Poster in An Isaac Newton Institute Workshop, Stochastic Computation for the Analysis of Ecological and Epidemiological Data, November 20-24 2006.

[12]
F. Hoti and L. Holmström. A semiparametric approach to statistical pattern recognition. In Bulletin of the International Statistical Institute, 54th Session, Contributed Papers, Volume LX, Two Books, Book 1, pages 510-511, Berlin, Germany, August 2003.

[13]
M. Sillanpää, F. Hoti, and L. Holmström. The posterior density of a quantitative trait locus from a Markov chain Monte Carlo sample. In 7th Quantitative Trait Locus Mapping and Marker-Assisted Selection Workshop, page 41. Universidad Politécnica de Valencia, October 19-20 2001.

[14]
L. Holmström, P. Koistinen, F. Hoti, and P. Erästö. Classification of complex data. In Year 2000, 5th World Congress of the Bernoulli Society for Mathematical Statistics and Probability and 63rd Meeting of the Institute of Mathematical Statistics. Program, Abstracts and Directory of participants, page 76, Guanajuato, Mexico, 2000. Invited paper.

[15]
L. Holmström, F. Hoti, and P. Koistinen. Experiments in polychotomous classification. In Bulletin of the International Statistical Institute, ISI 99, 52nd Session, Contributed Papers, Tome LVIII, Three Books, Book 2, page 41, Helsinki, Finland, August 10 - 18 1999.

[16]
F. Hoti. Handwritten digit classification via computationally efficient kernel regression. In Tiedosta tutkittua, Raportti Tiedon tutkimusohjelman I tutkijaseminaarista, Reports of the Information Research Programme of the Academy of Finland 3, Tampere, pages 215-219, Tampere, Finland, 1999. Tampereen yliopisto, Tietoyhteiskunnan tutkimuskeskus.